PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126657.1
Common NameZCHP1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 159aa    MW: 17104 Da    PI: 9.9738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001880102123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg  F+    L  H+r+H
  XP_009126657.1  80 HPCPICGVEFPMGQALGGHMRKH 102
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355133559IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803759IPR007087Zinc finger, C2H2
PfamPF139125.3E-74161IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-579106No hitNo description
PfamPF139124.0E-1180103IPR007087Zinc finger, C2H2
PROSITE profilePS501579.82780107IPR007087Zinc finger, C2H2
SMARTSM003550.06780102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MVAEIKSTVE ATAANCLMLL SRVGQENGGD TKRVFTCKTC TCLKEFQSFQ ALGGHRASHK  60
KPNNENLSGL IKKAKTPSSH PCPICGVEFP MGQALGGHMR KHRNENGGGV ALVTRALLPE  120
PTVTTLKKTS SGKRVACLDL ILGMVENLNL KLELGRTVY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126657.11e-114PREDICTED: LOW QUALITY PROTEIN: zinc finger protein ZAT12
SwissprotQ424105e-92ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLA0A078F8231e-107A0A078F823_BRANA; BnaA02g06780D protein
TrEMBLE2IPA61e-107E2IPA6_BRACM; C2H2 type zinc finger protein
STRINGBra006691.1-P1e-91(Brassica rapa)
STRINGBra006692.1-P1e-91(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-93C2H2 family protein